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  1. AstroAgents AstroAgents Public

    AstroAgents: Multi-Agent AI for Hypothesis Generation from Mass Spectrometry Data

    Python 13 2

  2. LowNSAE LowNSAE Public

    Official code repository for Sparse Autoencoders for Low-N Protein Function Prediction and Design

    Python 7

  3. shap-zero shap-zero Public

    Pip package for amortized Shapley values and interactions in biological sequence models

    Python 7

  4. InteractionRecovery InteractionRecovery Public

    Official code repository for On Recovering Higher-order Interactions from Protein Language Models

    Jupyter Notebook 5

  5. shapzero shapzero Public

    Repository to reproduce experiments from SHAP zero Explains Biological Sequence Models with Near-zero Marginal Cost for Future Queries

    Python 5

  6. ProtoMech ProtoMech Public

    Official code repository for Protein Circuit Tracing via Cross-layer Transcoders

    Python 5 2

Repositories

Showing 10 of 11 repositories
  • ProtoMech Public

    Official code repository for Protein Circuit Tracing via Cross-layer Transcoders

    amirgroup-codes/ProtoMech’s past year of commit activity
    Python 5 Apache-2.0 2 0 0 Updated Mar 9, 2026
  • cryoSENSE Public

    Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors (Diffusion Model) on the Protein Cryo-EM Image Manifold

    amirgroup-codes/cryoSENSE’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Nov 19, 2025
  • GOLF Public

    Official code repository for GOLF: A Generative AI Framework for Pathogenicity Prediction of Myocilin OLF Variants

    amirgroup-codes/GOLF’s past year of commit activity
    Python 0 0 0 0 Updated Sep 30, 2025
  • shap-zero Public

    Pip package for amortized Shapley values and interactions in biological sequence models

    amirgroup-codes/shap-zero’s past year of commit activity
    Python 7 MIT 0 0 0 Updated Sep 27, 2025
  • LowNSAE Public

    Official code repository for Sparse Autoencoders for Low-N Protein Function Prediction and Design

    amirgroup-codes/LowNSAE’s past year of commit activity
    Python 7 0 0 0 Updated Sep 26, 2025
  • LifeTracer Public

    LifeTracer: comprehensive Python package for 2D gas chromatography analysis and signature discovery

    amirgroup-codes/LifeTracer’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 25, 2025
  • SpecMER Public

    Official code repo for SpecMER: Fast Protein Generation with K-mer Guided Speculative Decoding

    amirgroup-codes/SpecMER’s past year of commit activity
    Python 2 0 0 0 Updated Sep 23, 2025
  • shapzero Public

    Repository to reproduce experiments from SHAP zero Explains Biological Sequence Models with Near-zero Marginal Cost for Future Queries

    amirgroup-codes/shapzero’s past year of commit activity
    Python 5 0 0 0 Updated Sep 21, 2025
  • GFast Public

    Official code repository for Efficient Algorithm for Sparse Fourier Transform of Generalized q-ary Functions

    amirgroup-codes/GFast’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jun 7, 2025
  • AstroAgents Public

    AstroAgents: Multi-Agent AI for Hypothesis Generation from Mass Spectrometry Data

    amirgroup-codes/AstroAgents’s past year of commit activity
    Python 13 MIT 2 0 0 Updated Apr 1, 2025
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